CTRPv2 TreatmentResponse Snakemake Pipeline

Authors: Jermiah Joseph

Contact: bhklab.jermiahjoseph@gmail.com

Description: Pipeline to generate TreatmentResponseExperiment from raw data.

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GitHub last commit GitHub issues GitHub pull requests GitHub contributors GitHub release (latest by date)

📦 Download

You can download the latest processed treatmentResponseExperiment here:

➡️ Download RDS File

[!NOTE] If the file does not exist yet, look through the releases to find a release that contains the file.

Set Up

Prerequisites

Pixi is required to run this project. If you haven't installed it yet, follow these instructions

Installation

  1. Clone this repository to your local machine
  2. Navigate to the project directory
  3. Set up the environment using Pixi:
pixi install

Documentation

Click here to view the full documentation.